Configuration failed to find the --static freetype2 library. (Fresh Ubuntu 20.04 LTS Setup). Documentation: Reference manual: locfit.pdf Downloads: Reverse dependencies: Linking: Please use the canonical form https://CRAN.R-project.org/package=locfitto link to this page. How to import local packages without gopath. In this case the error message is slightly misleading: package 'foobarbaz' is not available (for R version x.y.z). Thanks for contributing an answer to Stack Overflow! From searching I managed to install RCurl but I still get the bellow error. (As with installr, you may need to install.packages("remotes") first. For some reason, the package was still there, but install.packages was only looking at the updated (and incompatible) version. Why does it seem like I am losing IP addresses after subnetting with the subnet mask of 255.255.255.192/26? AC Op-amp integrator with DC Gain Control in LTspice, How do you get out of a corner when plotting yourself into a corner, Batch split images vertically in half, sequentially numbering the output files. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. I was using an out of date operating system for R and it wouldn't install DESeq2 which was my main objective. I run into this error ("package XXX is not available for R version X.X.X") when trying to install pkgdown in my RStudio on my company's HPC. Please what could be a reason for this error? try this install_github("YosefLab/ImpulseDE2"). The main problem of that was that I couldnt install RCurl. You can select a different mirror with chooseCRANmirror () and try the installation again. Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. Try no and compare results. Trouble Installing geoR package Find centralized, trusted content and collaborate around the technologies you use most. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Making statements based on opinion; back them up with references or personal experience. DESeq2 installation Error (ERROR: dependency 'locfit' is not available Extending Mensur's answer, here are previous releases of locfit: https://cran.r-project.org/src/contrib/Archive/locfit/. Try installing: * deb: libfontconfig1-dev (Debian, Ubuntu, etc), If --static freetype2 is already installed, check that, PATH and PKG_CONFIG_PATH contains a --static freetype2.pc file. BEGIN @Anirban166 you appear to be compiling all these packages from source; you'll find life much easier if you instead install binaries. To verify the proper installation of Cairo: @joycekang on which operating system are you installing pkgdown, and what version are you installing (CRAN or GitHub)? AC Op-amp integrator with DC Gain Control in LTspice, Linear Algebra - Linear transformation question. Hello everybody! There is no source version of the package, Although the binary version of your package is available, the source version is not. How can I use it? One thing that happened for me is that the version of R provided by my linux distribution (R version 3.0.2 provided by Ubuntu 14.04) was too old for the latest version of the package available on CRAN (in my case, plyr version 1.8.3 as of today). installation of package had non-zero exit status, How Intuit democratizes AI development across teams through reusability. Why do many companies reject expired SSL certificates as bugs in bug bounties? At first I had about 10 errors regarding packages I couldnt install. Have a question about this project? The main problem of that was that I couldnt install RCurl. Citation (from within R, DEseq2edgeR R , Cannot find xml2-config ERROR: configuration failed for package XML , xml, ERROR: dependency RCurl is not available for package GenomeInfoDb, RCurl, ERROR: dependency locfit is not available for package DESeq2 locfit1.5-9.2, sudo conda , Rpackage xx is not available (for R version xx), internal server error_Rdependencies * are not available for package, #ubuntu centosyum, 'https://cran.r-project.org/src/contrib/Archive/locfit/locfit_1.5-9.2.tar.gz', RNA, 2016A survey of best practices for RNA-seq data analysisRNATopHat,STARBowtie.TopHatHISAT1. Author: Yunshun Chen, Aaron TL Lun, Davis J McCarthy, Matthew E Ritchie, Belinda Phipson, Yifang Hu, Xiaobei Zhou, Mark D Robinson, Gordon K Smyth, Maintainer: Yunshun Chen , Gordon Smyth , Aaron Lun , Mark Robinson . rev2023.3.3.43278. 'getOption("repos")' replaces Bioconductor standard repositories, see when I try to install the package , it returns a message like this: Warning message: At first I had about 10 errors regarding packages I couldnt install. Thats whats the obvious and what got through my mind at first but taking under consideration that I just got into the field I thought that this is no way whats going on and that it has to do with some deeper R knowledge. Done Building dependency tree Reading state information. Recovering from a blunder I made while emailing a professor. package ImpulseDE2 is not available for Bioconductor version '3.14', A version of this package for your version of R might be available elsewhere, Sign in Thank you for your response; How can I type the code in console for this installation? The package is in a non-standard repository. Same here. Connect and share knowledge within a single location that is structured and easy to search. installation - How should I deal with "package 'xxx' is not available For example, I needed to install 7 packages(Sejong, hash, rJava, tau, RSQLite, devtools, stringr) to install KoNLP package. This should fix the issue. The nature of simulating nature: A Q&A with IBM Quantum researcher Dr. Jamie We've added a "Necessary cookies only" option to the cookie consent popup. privacy statement. set n=N-1; I did install.packages('path/to/source/code/of/foobarbaz', type='source', repos=NULL) which worked for me in this occasion. same issue today with renv::install("pkgdown") and install.packages("pkgdown") persisted after conda install -c anaconda fribidi. RHIPE on the other hand isn't in a CRAN-like repository and has its own installation instructions. Would the magnetic fields of double-planets clash? I got "package is not available" Equation alignment in aligned environment not working properly, Styling contours by colour and by line thickness in QGIS. It allows loading package from given directory: Version: 1.5-9.7: Depends: R ( 4.1.0) . Already on GitHub? Relation between transaction data and transaction id. Is the bigvis package for R not available for R version 3.0.1? Author Anirban166 on Oct 29, 2020 edited Thanks @zkamvar, I have homebrew and that worked for freetype. My solution is to read the output of dependent packages that are listed in red and identified with issues (e.g., "cannot install"). That error simply tells you that broom is not installed. Did any DOS compatibility layers exist for any UNIX-like systems before DOS started to become outmoded? Linear regulator thermal information missing in datasheet. Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Asking for help, clarification, or responding to other answers. to your account. The error message from {systemfonts} suggests that you need to install the freetype2 library on your machine: If you don't have homebrew, I would suggest to install it ( https://brew.sh/) and then run brew install freetype from your terminal. As mentioned here (in French), this can happen when you have two versions of R installed on your computer. To permanently change this, add a line like setRepositories(ind = c(1:6, 8)) to your Rprofile.site file. @laresbernardo this will resolve itself in 24-48 hours when the macOS binary of textshaping is available. For the Nozomi from Shinagawa to Osaka, say on a Saturday afternoon, would tickets/seats typically be available - or would you need to book? How should I deal with "package 'xxx' is not available (for R version x.y.z)" warning? Perhaps you don't really want a package. Connect and share knowledge within a single location that is structured and easy to search. Connect and share knowledge within a single location that is structured and easy to search. see the ideas at Install from local (i.e. How would "dark matter", subject only to gravity, behave? In .inet_warning(msg) : Using Kolmogorov complexity to measure difficulty of problems? This doesn't seem to be working for kableExtra. You'll need to provide more details from the error message. To see which repositories R will look in for your package, and optionally select some additional ones. Full text of the 'Sri Mahalakshmi Dhyanam & Stotram', Relation between transaction data and transaction id. For Ubuntu 20.04 LTS with R 4.1 use commands below to install needed build-dependencies: Thanks for contributing an answer to Ask Ubuntu! Can I tell police to wait and call a lawyer when served with a search warrant? To learn more, see our tips on writing great answers. (Of course, you may need to install.packages("installr") first.). Start here for a quick overview of the site, Detailed answers to any questions you might have, Discuss the workings and policies of this site. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. I made the mistake of forgetting to put repos=NULL when installing the R package from source code. when I try to install the package , it returns a message like this: Warning message: In .inet_warning(msg) : package 'ImpulseDE2' is not available for Bioconductor version '3.14' A version of this package for y. Are there tables of wastage rates for different fruit and veg? That's a bug I reported already a few times, but I don't know if it's sorted already. Rbbg). Stack Exchange network consists of 181 Q&A communities including Stack Overflow, the largest, most trusted online community for developers to learn, share their knowledge, and build their careers. You may get a warning: dependencies 'xyz' not available for the package ,then first install those from the repository and then do steps 3-4 Maybe my work network somehow blocks these types of requests - I have to do something similar with Python and PIP. Another possible warnings message you may get when interacting with CRAN mirrors is: Which may indicate the selected CRAN repository is currently be unavailable. What is \newluafunction? r - installation of package had non-zero exit status - Stack Overflow apt or yum). Can I tell police to wait and call a lawyer when served with a search warrant? I need help installing a package "DESeq2" having BiocManager issues package syncwave/mvcwt is not available (for R version 3.0.2), package diamonds is not available (for R version 3.0.0). EnhancedVolcano dependency proj4 failed to install in R 4.1 ```In .inet_warning (msg) : package 'proj4 ' is not available for Bioconductor version '3.13' # include your problematic code here with any corresponding output # please also include the results of running the following in an R session . Q&A for work. Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide. Will Gnome 43 be included in the upgrades of 22.04 Jammy? Well occasionally send you account related emails. In my ~/.Renviron I had the following lines (from https://support.rstudio.com/hc/en-us/articles/200488488-Configuring-R-to-Use-an-HTTP-or-HTTPS-Proxy) causing the problem: solved the problem. The R version is not the issue - I have all of those packages installed under 3.6.2. Here's how to install it via apt for ubuntu: The easiest way to resolve this problem is to install a binary, e.g. Staging Ground Beta 1 Recap, and Reviewers needed for Beta 2, R: Installation of several packages had non-zero exit status, Installation of package forecast had non-zero exit status. https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages, https://stackoverflow.com/questions/1474081/how-do-i-install-an-r-package-from-source. Share Improve this answer Follow answered Nov 28, 2022 at 20:27 Mark Thompson 143 9 Add a comment "package rhipe is not available (for R version 3.1.2)". rna seq - can I download DESeq2 in R 3.6.3 in Linux MInt limit n,mnm Example: Another minor addition, while trying to test for an old R version using the docker image rocker/r-ver:3.1.0. Identify those arcade games from a 1983 Brazilian music video, Trying to understand how to get this basic Fourier Series. If so, how close was it? Usually stated dependency on R version is there for a reason, it may be wise to check what such change will potentially break.